PYGENMET#

GENETICS ALGORITHMS WITH PYTHON

Ibon Martínez-Arranz
2024-07-23

About me#

I'm Ibon Martínez-Arranz, with a BSc in Mathematics and MScs in Applied Statistics and Mathematical Modeling. Since 2010, I've been with OWL Metabolomics, initially as a researcher and now Head of the Data Science Department, focusing on Machine Learning Prediction, Statistical Computations, and supporting R&D projects.

Introduction#

This repository contains the documentation of pygenmet, a genetic algorithms package developed in Python.

This book includes a collection of functions and examples, written in Python, that shows how to use the PyGenMet package.

Rendering the manual#

To compile or generate the documentation with MkDocs try this from console:

Clone the repository:

$ git clone https://github.com/imarranz/pygenmet.git

Render the manual with MkDocs:

$ mkdocs build

Citation#

Article#

If you'd like to cite this article, instead of a specific version, use the following DOI: https://doi.org/10.1016/j.cmpb.2024.108346. Here is the bibtex entry for the article:

@article{MARTINEZARRANZ2024108346,
  title = {Genetic algorithms applied to translational strategy in metabolic-dysfunction associated steatohepatitis (MASH). Learning from mouse models},
  journal = {Computer Methods and Programs in Biomedicine},
  volume = {255},
  pages = {108346},
  year = {2024},
  issn = {0169-2607},
  doi = {https://doi.org/10.1016/j.cmpb.2024.108346},
  url = {https://www.sciencedirect.com/science/article/pii/S0169260724003390},
  author = {Ibon Martínez-Arranz and Cristina Alonso and Rebeca Mayo and Itziar Mincholé and José M. Mato and Dae-Jin Lee},
  keywords = {Python, Genetics algorithms, MASLD, MASH, Subtypes, Murine model},
}

Package#

I publish each release of PyGenMet on Zenodo and here is a list of version:

Version	Date	DOI
v1.0.0	August 22, 2021

If you'd like to cite this package, instead of a specific version, use the following DOI: https://doi.org/10.5281/zenodo.5233539. Here is the bibtex entry for the package:

@software{ibon_martinez_arranz_2021_5233539,
  author       = {Ibon Martínez-Arranz},
  title        = {imarranz/pygenmet: v1.0.0},
  month        = aug,
  year         = 2021,
  publisher    = {Zenodo},
  version      = {v1.0.0},
  doi          = {10.5281/zenodo.5233539},
  url          = {https://doi.org/10.5281/zenodo.5233539}
}